| Place | Lane | Name | School | Time |
| 1 | 1 | Evan Anderson | Menlo Atherton High Sch. | 4:17.26 |
| 2 | 2 | Marcos Corona | Willow Glen | 4:19.72 |
| 3 | 5 | Alejandro Alvarez-Bautista | Watsonville High School | 4:20.45 |
| 4 | 3 | Paul Nedeau | Saint Ignatius High School | 4:24.01 |
| 5 | 8 | Nick Palladino | Carlmont High School | 4:25.55 |
| 6 | 11 | Scott Edwards | Palma High School | 4:30.70 |
| 7 | 4 | Herrel Siller | Palo Alto High School | 4:31.31 |
| 8 | 9 | Billy Hale | Menlo Atherton High Sch. | 4:31.68 |
| 9 | 12 | Michael Nordlund | Palo Alto High School | 4:32.39 |
| 10 | 14 | Robbie Knorr | Valley Christian - Dublin | 4:33.31 |
| 11 | 13 | Angel Gonzalez | Del Mar | 4:34.85 |
| 12 | 6 | Brad Surh | Carlmont High School | 4:38.72 |
| 13 | 15 | Steve Delay | Pioneer | 4:41.02 |
| 14 | 10 | Beau Rogers | Watsonville High School | 4:41.09 |
| 15 | 7 | Juan Gutierrez | Yerba Buena | 4:41.33 |
| 16 | 16 | Jose Mendiola | Lincoln | 4:56.87 |