| Place | Lane | Name | School | Time |
| 1 | 1 | Ben Sitler | St. Francis High School | 4:21.57 |
| 2 | 2 | Monte Keleher | Burlingame High School | 4:22.98 |
| 3 | 8 | Mike Onorato | Leigh | 4:23.37 |
| 4 | 7 | Billy Wong | Live Oak High School | 4:24.42 |
| 5 | 3 | Seth Smart | Los Gatos High School | 4:24.77 |
| 6 | 5 | Matt Paquet | Monta Vista High School | 4:24.84 |
| 7 | 10 | Ken Douglas | Saratoga High School | 4:27.56 |
| 8 | 11 | Rigo Vasquez | San Benito Hollister HS | 4:28.30 |
| 9 | 9 | Nick Shea | Carmel High School | 4:28.48 |
| 10 | 6 | Enrique Lopez | Alisal High School | 4:31.21 |
| 11 | 14 | Wes Buntman | Monte Vista Christian HS | 4:34.87 |
| 12 | 15 | Stephen Matsuoka | Leland | 4:36.12 |
| 13 | 4 | Rob Alvarado | Saint Ignatius High School | 4:36.86 |
| 14 | 13 | Alec Nickolls | Los Altos High School | 4:45.23 |
| 15 | 16 | Ahmed Desouki | San Jose Academy | 4:56.86 |