| Place | Lane | Name | School | Time | Qual Mark |
| 1 | 1 | Eric Day (12) | Milp | 9:56.21 | 09:45.00 |
| 2 | 2 | Seth Smart (11) | LG | 9:57.11 | 09:51.81 |
| 3 | 4 | Matthew Petrillo (10) | LG | 9:57.28 | 09:55.91 |
| 4 | 3 | Alec Nickolls (10) | LA | 10:03.47 | 09:52.00 |
| 5 | 8 | Scott Himmelberger (11) | Paly | 10:08.25 | 10:19.00 |
| 6 | 10 | Rishi Gupta (12) | Gunn | 10:09.22 | 10:19.82 |
| 7 | 11 | Francis Reynolds (11) | Paly | 10:12.89 | 10:29.00 |
| 8 | 9 | Zander MacQuitty (11) | Paly | 10:13.58 | 10:19.80 |
| 9 | 5 | Andy Burich (10) | Milp | 10:16.71 | 10:00.00 |
| 10 | 13 | Roscoe Linstadt (11) | Gunn | 10:31.89 | 10:33.13 |
| 11 | 12 | Russell Field (11) | LA | 10:40.53 | 10:30.00 |
| 12 | 7 | Michael Johnson (9) | LG | 10:49.57 | 10:18.20 |
| 13 | 15 | Gleb Denisov (12) | LA | 11:11.51 | 11:38.00 |
| 14 | 14 | Howard Liu (12) | Lyn | 11:16.40 | 11:12.39 |